Due to the entire rebuild of the save/load system to solve a possible security vulnerability, it seems that I've introduced a rather major bug, resulting in journal entries being incorrectly loaded.
I'm working on a fix right now. Unfortunately, it seems that saving a loaded game compounds the error; baking the messed up journal entries.
EDIT: A single line of important code has been deployed. The patch should be live before the day is out.
I apologise for any inconvenience.